Open Plant Phenotyping Database

This dataset is a re-hosting of OPPD, originally co-created by Mads Dyrmann and hosted by Aarhus University at https://vision.eng.au.dk/open-plant-phenotyping-database (archived version). We thank Department of Electrical and Computer Engineering, Aarhus University for their foundational contribution to this data.

Link to full paper

The Open Plant Phenotyping Database [OPPD] is a public dataset for visual recognition tasks on images of plant seedlings.

The dataset consists of 7,590 RGB images with 315,038 plant objects, representing 64,292 individual plants from 47 different species. Each plant species has been cultivated using three growth conditions (ideal, drought and natural) and tracked temporally to achieve high intra-species variability.
The physical resolution in the images measured at soil level is roughly 44 pixels/mm2

The database currently feature samples from the following species:

EPPO code Latin name English name
ALOMY Alopecurus myosuroides Blackgrass
ANGAR Anagallis arvensis Scarlet pimpernel
APESV Apera spica-venti Loose silky-bent
ARTVU Artemisia vulgaris Common mugwort
AVEFA Avena fatua Common wild oat
BROST Bromus sterilis Barren brome
BRSNN Brassica napus Rapeseed
CAPBP Capsella bursa-pastoris Shepherd’s purse
CENCY Cyanus segetum Cornflower
CHEAL Chenopodium album Fat-hen
CHYSE Glebionis segetum Corn marigold
CIRAR Cirsium arvense Creeping thistle
CONAR Convolvulus arvensis Field bindweed
EPHHE Euphorbia helioscopia Umbrella milkweed
EPHPE Euphorbia peplus Stinging milkweed
EROCI Erodium cicutarium Common stork’s-bill
FUMOF Fumaria officinalis Common fumitory
GALAP Galium aparine Cleavers
GERMO Geranium molle Dove’s-foot crane’s-bill
LAPCO Lapsana communis Nipplewort
LOLMU Lolium multiflorum Italian ryegrass
LYCAR Anchusa arvensis Common bugloss
MATCH Matricaria chamomilla Scented mayweed
MATIN Tripleurospermum inodorum Scentless mayweed
MELNO Silene noctiflora Night-flowering catchfly
MYOAR Myosotis arvensis Field forget-me-not
PAPRH Papaver rhoeas Common poppy
PLALA Plantago lanceolata Narrowleaf plantain
PLAMA Plantago major Broadleaf plantain
POAAN Poa annua Annual bluegrass
POLAV Polygonum aviculare Prostrate knotweed
POLCO Fallopia convolvulus Black bindweed
POLLA Persicaria lapathifolia Pale smartweed
POLPE Persicaria maculosa Redshank
RUMCR Rumex crispus Curly dock
SENVU Senecio vulgaris Common groundsel
SINAR arvensis Charlock Sinapis
SOLNI Solanum nigrum Black nightshade
SONAS Sonchus asper Spiny sowthistle
SONOL Sonchus oleraceus Common sowthistle
STEME Stellaria media Common chickweed
THLAR Thlaspi arvense Field penny-cress
URTUR Urtica urens Small nettle
VERAR Veronica arvensis Corn speedwell
VERPE Veronica persica Common field speedwell
VICHI Vicia hirsuta Common hairy tare
VIOAR Viola arvensis Field pansy

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License

Creative Commons-licens
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International – Licens.

Citation

If you use this dataset in your research or elsewhere, please cite/reference the following paper:
PAPER: Open Plant Phenotype Database of Common Weeds in Denmark

Bibtex:

@article{Madsen2020OPPD,
author = {Madsen, Simon Leminen and Mathiassen, Solvejg Kopp and Dyrmann, Mads and Laursen, Morten Stigaard and Paz, Laura-Carlota and J{\o}rgensen, Rasmus Nyholm},
doi = {10.3390/RS12081246},
journal = {Remote Sensing},
keywords = {dataset,plant phenotyping,plant seedlings,weed control},
month = {apr},
number = {8},
pages = {1246},
publisher = {Multidisciplinary Digital Publishing Institute},
title = {{Open Plant Phenotype Database of Common Weeds in Denmark}},
url = {https://www.mdpi.com/691100},
volume = {12},
year = {2020}
}

Responsible for the page’s content: Mads Dyrmann